Difference between revisions of "Utah Genome Project"
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| − | + | The [http://healthsciences.utah.edu/utah-genome-project/ Utah Genome Project] has developed a detailed variant calling protocol based on the [https://www.broadinstitute.org/gatk/ GATK HapoltypeCaller]. This protocol very closely follows the [https://www.broadinstitute.org/gatk/guide/best-practices GATK Best Practices] for variant calling on DNAseq data, however here we provide detailed and versioned protocol that includes exact command lines for each step in the analysis as well as links to accessory datasets. | |
== Variant Analysis Pipeline == | == Variant Analysis Pipeline == | ||
Revision as of 04:48, 11 February 2015
The Utah Genome Project has developed a detailed variant calling protocol based on the GATK HapoltypeCaller. This protocol very closely follows the GATK Best Practices for variant calling on DNAseq data, however here we provide detailed and versioned protocol that includes exact command lines for each step in the analysis as well as links to accessory datasets.
Variant Analysis Pipeline
- cApTUrE - a lightweight NGS analysis pipeline implimenting the UGP variant calling protocol)
