Difference between revisions of "Main Page"

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Welcome to the MAKER Wiki.  This is a place to find documentation, and details about the MAKER Genome Annotation Pipeline:
 
Welcome to the MAKER Wiki.  This is a place to find documentation, and details about the MAKER Genome Annotation Pipeline:
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==Getting started with MAKER==
 
==Getting started with MAKER==
 
* [http://www.yandell-lab.org/software/maker.html Download and License MAKER]
 
* [http://www.yandell-lab.org/software/maker.html Download and License MAKER]
* [[MAKER Tutorial]]
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* [[MAKER Tutorial for WGS Assembly and Annotation Winter School 2018]]
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* [[MAKER Tutorial for GMOD Online Training 2014]] (includes instructional video and slides)
 
* [[MAKER tutorial for GMOD Malaysia]]
 
* [[MAKER tutorial for GMOD Malaysia]]
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* [http://efish.zoology.msu.edu/2015/02/10/annotate.html MAKER in the AWS Cloud Tutorial (Gallant Lab - MSU)]
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==MAKER on CyVerse (previously iPlant)==
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* [https://pods.iplantcollaborative.org/wiki/display/TUT/MAKER+2.31.9+with+CCTOOLS+Jetstream+Tutorial MAKER at CyVerse]
  
 
==Creating a species specific repeat library==
 
==Creating a species specific repeat library==
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* [[Repeat Library Construction-Basic]]
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* [[Repeat Library Construction-Advanced]]
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==Getting Help with MAKER==
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* [[FAQ]]
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*[https://groups.google.com/forum/?fromgroups#!forum/maker-devel MAKER developers list archive]
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* [[MAKER developers list]]
  
* [[Repeat Library Construction--Basic]]
 
* [[Repeat Library Construction--Advanced]]
 
  
 
==Other MAKER use cases==
 
==Other MAKER use cases==
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* [[Your Genome Project Start to Finish--UNDER CONSTRUCTION]]
 
* [[Your Genome Project Start to Finish--UNDER CONSTRUCTION]]
 
* [[Comparing annotations from different annotation pipelines--UNDER CONSTRUCTION]]
 
* [[Comparing annotations from different annotation pipelines--UNDER CONSTRUCTION]]
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==MAKER odds and ends==
 
==MAKER odds and ends==
 
* [[The MAKER control files explained]]
 
* [[The MAKER control files explained]]
  
==Getting Help==
 
* [[FAQ]]
 
* [[MAKER developers list]]
 
  
Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
 
  
 
== Media Wiki Stuff ==
 
== Media Wiki Stuff ==
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Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
 
* [//www.mediawiki.org/wiki/Manual:Configuration_settings Configuration settings list]
 
* [//www.mediawiki.org/wiki/Manual:Configuration_settings Configuration settings list]
 
* [//www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
 
* [//www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
 
* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
 
* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
 
* [//www.mediawiki.org/wiki/Localisation#Translation_resources Localise MediaWiki for your language]
 
* [//www.mediawiki.org/wiki/Localisation#Translation_resources Localise MediaWiki for your language]

Latest revision as of 04:18, 7 November 2019