Difference between revisions of "Main Page"

From MAKER Wiki
Jump to navigation Jump to search
 
(35 intermediate revisions by 3 users not shown)
Line 2: Line 2:
  
  
 +
==Getting started with MAKER==
 
* [http://www.yandell-lab.org/software/maker.html Download and License MAKER]
 
* [http://www.yandell-lab.org/software/maker.html Download and License MAKER]
* [[MAKER Tutorial]]
+
* [[MAKER Tutorial for WGS Assembly and Annotation Winter School 2018]]
* [[Repeat Library Construction--Basic]]
+
* [[MAKER Tutorial for GMOD Online Training 2014]] (includes instructional video and slides)
* [[Repeat Library Construction--Advanced]]
+
* [[MAKER tutorial for GMOD Malaysia]]
 +
* [http://efish.zoology.msu.edu/2015/02/10/annotate.html MAKER in the AWS Cloud Tutorial (Gallant Lab - MSU)]
  
 +
==MAKER on CyVerse (previously iPlant)==
 +
* [https://pods.iplantcollaborative.org/wiki/display/TUT/MAKER+2.31.9+with+CCTOOLS+Jetstream+Tutorial MAKER at CyVerse]
 +
 +
==Creating a species specific repeat library==
 +
* [[Repeat Library Construction-Basic]]
 +
* [[Repeat Library Construction-Advanced]]
 +
 +
==Getting Help with MAKER==
 +
* [[FAQ]]
 +
*[https://groups.google.com/forum/?fromgroups#!forum/maker-devel MAKER developers list archive]
 +
* [[MAKER developers list]]
 +
 +
 +
==Other MAKER use cases==
 +
* [[Updating annotations in light of new data]]
 +
* [[Your Genome Project Start to Finish--UNDER CONSTRUCTION]]
 +
* [[Comparing annotations from different annotation pipelines--UNDER CONSTRUCTION]]
 +
 +
 +
==MAKER odds and ends==
 +
* [[The MAKER control files explained]]
 +
 +
 +
 +
== Media Wiki Stuff ==
 
Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
 
Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
 
== Getting started ==
 
 
* [//www.mediawiki.org/wiki/Manual:Configuration_settings Configuration settings list]
 
* [//www.mediawiki.org/wiki/Manual:Configuration_settings Configuration settings list]
 
* [//www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
 
* [//www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
 
* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
 
* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
 
* [//www.mediawiki.org/wiki/Localisation#Translation_resources Localise MediaWiki for your language]
 
* [//www.mediawiki.org/wiki/Localisation#Translation_resources Localise MediaWiki for your language]

Latest revision as of 04:18, 7 November 2019