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- 20:26, 14 July 2016 diff hist +126 UGP Variant Pipeline 1.4.0 →GATK Variant Calling current
- 20:17, 14 July 2016 diff hist +195 UGP Variant Pipeline 1.4.0 →BAM Merging
- 15:55, 24 June 2016 diff hist +11 UGP Variant Pipeline 1.4.0
- 03:29, 13 October 2015 diff hist +7 UGP Variant Pipeline 1.4.0 →Fasta Sequences
- 03:28, 13 October 2015 diff hist +3 UGP Variant Pipeline 1.4.0 →Fasta Sequences
- 03:28, 13 October 2015 diff hist +5,144 N Fasta sequences regions and decoys Created page with " >1 dna:chromosome chromosome:GRCh37:1:1:249250621:1 >2 dna:chromosome chromosome:GRCh37:2:1:243199373:1 >3 dna:chromosome chromosome:GRCh37:3:1:198022430:1 >4 dna:chromoso..." current
- 22:39, 12 October 2015 diff hist +71 UGP Variant Protocol current
- 22:38, 12 October 2015 diff hist +1 UGP Variant Pipeline 1.4.0 →WHAM
- 22:38, 12 October 2015 diff hist -120 UGP Variant Pipeline 1.4.0 →WHAM
- 22:35, 12 October 2015 diff hist -7 UGP Variant Pipeline 1.4.0 →WHAM
- 22:34, 12 October 2015 diff hist +127 UGP Variant Pipeline 1.4.0
- 22:33, 12 October 2015 diff hist +108 UGP Variant Pipeline 1.4.0 →WHAM
- 22:31, 12 October 2015 diff hist +1 UGP Variant Pipeline 1.4.0 →WHAM
- 22:31, 12 October 2015 diff hist +7 UGP Variant Pipeline 1.4.0 →BAM Merge
- 22:31, 12 October 2015 diff hist -1 UGP Variant Pipeline 1.4.0 →BAMs Merge
- 22:30, 12 October 2015 diff hist -28 UGP Variant Pipeline 1.4.0 →Merge chromosomal BAMs into individual
- 22:30, 12 October 2015 diff hist +2 UGP Variant Pipeline 1.4.0 →WHAM
- 22:30, 12 October 2015 diff hist +1,031 UGP Variant Pipeline 1.4.0
- 22:10, 12 October 2015 diff hist +62 UGP Variant Pipeline 1.4.0
- 22:08, 12 October 2015 diff hist +6,869 UGP Variant Pipeline 1.4.0
- 22:04, 12 October 2015 diff hist +1 UGP Variant Pipeline 1.4.0
- 22:03, 12 October 2015 diff hist +1,221 UGP Variant Pipeline 1.4.0
- 21:58, 12 October 2015 diff hist +3,059 N UGP Variant Pipeline 1.4.0 Created page with "= Utah Genome Project = Oct. 2015 Variant Calling Pipeline Version 1.4.0 ===Software Versions=== *[http://srynobio.github.io/UGPp/ UGPp] is a lightweight NGS pipeline, cre..."
- 19:20, 27 June 2015 diff hist +71 UGP Variant Protocol
- 19:20, 27 June 2015 diff hist +2 UGP Variant Pipeline 1.3.1 →Tabix current
- 19:19, 27 June 2015 diff hist +2 UGP Variant Pipeline 1.3.1
- 19:19, 27 June 2015 diff hist +11,808 N UGP Variant Pipeline 1.3.1 Created page with "= Utah Genome Project = June. 2015 Variant Calling Pipeline Version 1.3.1 ===Software Versions=== *[http://srynobio.github.io/UGPp/ UGPp] is a lightweight NGS pipeline, cr..."
- 19:15, 27 June 2015 diff hist -6 Utah Genome Project →UGP Variant Calling current
- 18:23, 28 May 2015 diff hist +71 UGP Variant Protocol
- 18:22, 28 May 2015 diff hist -697 UGP Variant Pipeline 1.3.0 current
- 18:15, 28 May 2015 diff hist -220 UGP Variant Pipeline 1.3.0 -p
- 18:00, 28 May 2015 diff hist -9 UGP Variant Pipeline 1.3.0
- 17:35, 28 May 2015 diff hist +12,619 N UGP Variant Pipeline 1.3.0 Created page with "= Utah Genome Project = Jan. 2015 Variant Calling Pipeline Version 1.3.0 ===Software Versions=== *[http://srynobio.github.io/cApTUrE/ cApTUrE] is a lightweight NGS pipeli..."
- 19:42, 12 March 2015 diff hist -5 UGP Variant Pipeline 1.2.1 →Data Source current
- 04:32, 20 February 2015 diff hist 0 Utah Genome Project →UGP Variant Calling
- 18:16, 11 February 2015 diff hist +24 FreeBayes Variant Protocol →FastQ File Analyses current
- 18:16, 11 February 2015 diff hist 0 FreeBayes Variant Protocol →FastQ File Analyses
- 18:15, 11 February 2015 diff hist +10 FreeBayes Variant Protocol →FastQ File Analyses
- 18:12, 11 February 2015 diff hist -1 FreeBayes Variant Protocol →VCFfilter
- 18:09, 11 February 2015 diff hist -9 FreeBayes Variant Protocol →Indexing
- 18:09, 11 February 2015 diff hist 0 FreeBayes Variant Protocol →Software Versions
- 18:08, 11 February 2015 diff hist -2 FreeBayes Variant Protocol →Data Source
- 18:07, 11 February 2015 diff hist -703 FreeBayes Variant Protocol →Filtering Varients
- 18:07, 11 February 2015 diff hist -145 FreeBayes Variant Protocol →Variant Calling
- 18:00, 11 February 2015 diff hist -1 FreeBayes Variant Protocol →Data Source
- 18:00, 11 February 2015 diff hist -8 FreeBayes Variant Protocol →Data Source
- 17:58, 11 February 2015 diff hist +3 FreeBayes Variant Protocol →CombineVarients
- 17:58, 11 February 2015 diff hist -3,812 FreeBayes Variant Protocol →Variant Calling
- 17:56, 11 February 2015 diff hist -669 FreeBayes Variant Protocol →BAM File Analyses and Processing
- 17:52, 11 February 2015 diff hist -19 FreeBayes Variant Protocol →Alignment
- 17:51, 11 February 2015 diff hist +81 FreeBayes Variant Protocol →Alignment
- 17:48, 11 February 2015 diff hist +11 FreeBayes Variant Protocol →Alignment
- 17:48, 11 February 2015 diff hist -11 FreeBayes Variant Protocol →Alignment
- 17:47, 11 February 2015 diff hist +115 FreeBayes Variant Protocol →Alignment
- 17:46, 11 February 2015 diff hist +314 FreeBayes Variant Protocol →Alignment
- 17:41, 11 February 2015 diff hist -49 FreeBayes Variant Protocol →Indexing
- 17:40, 11 February 2015 diff hist -156 FreeBayes Variant Protocol →Indexing
- 17:39, 11 February 2015 diff hist +10 FreeBayes Variant Protocol
- 17:39, 11 February 2015 diff hist +13,774 N FreeBayes Variant Protocol Created page with "= Alternate UGP Variant Calling Protocol = Feb. 2015 Variant Calling Pipeline Version 1.0.0 ===Software Versions=== *FastQforward is an ultra parallelized NGS pipeline, cre..."
- 16:08, 11 February 2015 diff hist -1 Utah Genome Project →Protocol Developement
- 05:11, 11 February 2015 diff hist +136 Utah Genome Project →Protocol Developement
- 05:03, 11 February 2015 diff hist +106 Utah Genome Project →Protocol Developement
- 05:02, 11 February 2015 diff hist +242 Utah Genome Project →UGP Variant Calling
- 04:57, 11 February 2015 diff hist +64 Utah Genome Project →Variant Analysis Pipeline
- 04:55, 11 February 2015 diff hist 0 Utah Genome Project →Variant Analysis Pipeline
- 04:55, 11 February 2015 diff hist +359 Utah Genome Project →Variant Analysis Pipeline
- 04:50, 11 February 2015 diff hist +705 N UGP Variant Protocol Created page with "* UGP Variant Protocol Version 1.2.1 * UGP Variant Protocol Version 1.1.6 * UGP_Variant_Pipeline_1.0.6 | ..."
- 04:49, 11 February 2015 diff hist 0 Utah Genome Project
- 04:49, 11 February 2015 diff hist 0 UGP Variant Pipeline current
- 04:48, 11 February 2015 diff hist +438 Utah Genome Project →Utah Genome Project =
- 04:40, 11 February 2015 diff hist -40 Utah Genome Project
- 06:01, 2 February 2015 diff hist -12 UGP Variant Pipeline 1.2.1 →Data Source
- 05:59, 2 February 2015 diff hist +544 UGP Variant Pipeline 1.2.1 →Data Source
- 20:30, 28 January 2015 diff hist -1 UGP Variant Pipeline 1.2.1 →Software Versions
- 20:29, 28 January 2015 diff hist -1 UGP Variant Pipeline 1.2.1 →Utah Genome Project
- 18:14, 28 January 2015 diff hist 0 UGP Variant Pipeline 1.2.1 →Utah Genome Project
- 17:13, 28 January 2015 diff hist +71 UGP Variant Pipeline
- 17:12, 28 January 2015 diff hist -2 Utah Genome Project
- 16:59, 28 January 2015 diff hist +337 UGP Variant Pipeline 1.2.1 →CombineVarients
- 16:55, 28 January 2015 diff hist +271 UGP Variant Pipeline 1.2.1 →Variant Calling
- 16:44, 28 January 2015 diff hist +485 UGP Variant Pipeline 1.2.1 →Variant Calling
- 16:37, 28 January 2015 diff hist +409 UGP Variant Pipeline 1.2.1 →Variant Calling
- 16:30, 28 January 2015 diff hist 0 UGP Variant Pipeline 1.2.1 →HaplotypeCaller
- 16:30, 28 January 2015 diff hist +146 UGP Variant Pipeline 1.2.1 →HaplotypeCaller
- 16:27, 28 January 2015 diff hist -1 UGP Variant Pipeline 1.2.1 →BaseRecalibration & PrintReads
- 16:27, 28 January 2015 diff hist -1 UGP Variant Pipeline 1.2.1 →BaseRecalibration & PrintReads
- 16:27, 28 January 2015 diff hist +1 UGP Variant Pipeline 1.2.1 →BaseRecalibration & PrintReads
- 16:26, 28 January 2015 diff hist -1 UGP Variant Pipeline 1.2.1 →BaseRecalibration & PrintReads
- 16:26, 28 January 2015 diff hist +274 UGP Variant Pipeline 1.2.1 →BaseRecalibration & PrintReads
- 16:22, 28 January 2015 diff hist -1 UGP Variant Pipeline 1.2.1 →Local Realignment of Indels
- 16:21, 28 January 2015 diff hist +1 UGP Variant Pipeline 1.2.1 →Local Realignment of Indels
- 16:21, 28 January 2015 diff hist +122 UGP Variant Pipeline 1.2.1 →Local Realignment of Indels
- 16:16, 28 January 2015 diff hist -1 UGP Variant Pipeline 1.2.1 →BAM Quality Control
- 16:15, 28 January 2015 diff hist +80 UGP Variant Pipeline 1.2.1 →BAM Quality Control
- 16:14, 28 January 2015 diff hist -8 UGP Variant Pipeline 1.2.1 →BAM Quality Control
- 16:11, 28 January 2015 diff hist +22 UGP Variant Pipeline 1.2.1 →Merge lane level BAMs to individual
- 16:08, 28 January 2015 diff hist 0 UGP Variant Pipeline 1.2.1 →BAM File Analyses and Processing
- 16:07, 28 January 2015 diff hist +1 UGP Variant Pipeline 1.2.1 →Utah Genome Project
- 16:07, 28 January 2015 diff hist +308 UGP Variant Pipeline 1.2.1 →BAM File Analyses and Processing
- 16:04, 28 January 2015 diff hist +34 UGP Variant Pipeline 1.2.1 →Mark Duplicates
- 16:01, 28 January 2015 diff hist -1 UGP Variant Pipeline 1.2.1 →Software Versions
- 15:59, 28 January 2015 diff hist +11,134 N UGP Variant Pipeline 1.2.1 Created page with "= Utah Genome Project = Nov. 2014 Variant Calling Pipeline Version 1.2.1 ===Software Versions=== *[https://github.com/srynobio/cApTUrE cApTUrE] is a lightweight NGS pipe..."
- 23:00, 13 November 2014 diff hist +123 UGP Variant Pipeline 1.1.6 →Software Versions current
- 22:59, 13 November 2014 diff hist +71 UGP Variant Pipeline
- 22:59, 13 November 2014 diff hist +11,085 N UGP Variant Pipeline 1.1.6 Created page with "= Utah Genome Project = Nov. 2014 Variant Calling Pipeline Version 1.1.6 ===Software Versions=== *GenomeAnalysisTK-3.3-2 *Picard : Version: 1.112 *FastQC v0.10.1 *Samtoo..."
- 13:13, 7 November 2014 diff hist 0 UGP Variant Pipeline 1.0.6 →Utah Genome Project current
- 13:13, 7 November 2014 diff hist 0 UGP Variant Pipeline
- 13:12, 7 November 2014 diff hist +71 UGP Variant Pipeline
- 13:12, 7 November 2014 diff hist +11,085 N UGP Variant Pipeline 1.0.6 Created page with "= Utah Genome Project = Sep. 2014 Variant Calling Pipeline Version 1.0.6 ===Software Versions=== *GenomeAnalysisTK-3.3-2 *Picard : Version: 1.112 *FastQC v0.10.1 *Samtoo..."
- 15:07, 16 September 2014 diff hist +51 UGP Variant Pipeline 1.0.5 →Data Source current
- 17:22, 8 September 2014 diff hist +31 UGP Variant Pipeline 1.0.5 →HaplotypeCaller
- 17:15, 8 September 2014 diff hist +71 UGP Variant Pipeline
- 17:14, 8 September 2014 diff hist +147 UGP Variant Pipeline 1.0.5 →BAM Quality Control
- 17:11, 8 September 2014 diff hist -2 UGP Variant Pipeline 1.0.5 →FastQ File Analyses
- 17:10, 8 September 2014 diff hist +4 UGP Variant Pipeline 1.0.5 →FastQ File Analyses
- 17:10, 8 September 2014 diff hist -1 UGP Variant Pipeline 1.0.5 →FastQ File Analyses
- 17:09, 8 September 2014 diff hist -23 UGP Variant Pipeline 1.0.5 →Data Source
- 17:08, 8 September 2014 diff hist -5 UGP Variant Pipeline 1.0.5 →Software Versions
- 17:07, 8 September 2014 diff hist +8 UGP Variant Pipeline 1.0.5 →Data Source
- 17:05, 8 September 2014 diff hist 0 UGP Variant Pipeline 1.0.5 →Data Source
- 17:04, 8 September 2014 diff hist +10,752 N UGP Variant Pipeline 1.0.5 Created page with "= Utah Genome Project = Sep. 2014 Variant Calling Pipeline Version 1.0.5 ===Software Versions=== **GenomeAnalysisTK-3.3-2 **Picard : Version: 1.112 **FastQC v0.10.1 **Sa..."
- 15:49, 3 September 2014 diff hist +377 Background-individuals →Individuals use in UGP Background files current
- 15:49, 3 September 2014 diff hist +36 Background-individuals →Individuals use in UGP Background files
- 15:48, 3 September 2014 diff hist +992 Background-individuals →CEU
- 15:48, 3 September 2014 diff hist +917 Background-individuals →GBR
- 22:25, 29 August 2014 diff hist +28 Background-individuals →Individuals use in UGP Background files
- 22:24, 29 August 2014 diff hist +3 UGP Variant Pipeline 1.0.4 →Data Source current
- 21:59, 29 August 2014 diff hist +1 UGP Variant Pipeline 1.0.4 →Utah Genome Project
- 21:58, 29 August 2014 diff hist +132 UGP Variant Pipeline 1.0.4 →Data Source
- 21:57, 29 August 2014 diff hist +1,237 Background-individuals →Individuals use in UGP Background files
- 21:54, 29 August 2014 diff hist +842 N Background-individuals Created page with "== Individuals use in UGP Background files == GBR HG00096 HG00097 HG00099 HG00100 HG00101 HG00102 HG00103 HG00105 HG00106 HG00107 HG00108 HG00109 HG00110 HG0011..."
- 19:38, 25 August 2014 diff hist +6 UGP Variant Pipeline 1.0.4 →Data Source
- 21:08, 21 August 2014 diff hist -15 UGP Variant Pipeline 1.0.4 →Base Quality Score Recalibration & PrintReads
- 21:07, 21 August 2014 diff hist -16 UGP Variant Pipeline 1.0.4 →Software Versions
- 20:58, 21 August 2014 diff hist 0 UGP Variant Pipeline
- 20:58, 21 August 2014 diff hist +71 UGP Variant Pipeline
- 20:57, 21 August 2014 diff hist +10,364 N UGP Variant Pipeline 1.0.4 Created page with "= Utah Genome Project = Aug. 2014 Variant Calling Pipeline Version 1.0.4 ===Software Versions=== **GenomeAnalysisTK-3.3-2 **Picard : Version: 1.112 **FastQC v0.10.1 **Sa..."
- 20:55, 21 August 2014 diff hist -9 UGP Variant Pipeline 1.0.3 →BAM File Analyses and Processing current
- 20:54, 21 August 2014 diff hist -105 UGP Variant Pipeline 1.0.3 →BAM Quality Control
- 20:35, 21 August 2014 diff hist +27 UGP Variant Pipeline 1.0.3 →Mark Duplicates
- 20:33, 21 August 2014 diff hist +1 UGP Variant Pipeline 1.0.3 →FastQ File Analyses
- 20:33, 21 August 2014 diff hist -114 UGP Variant Pipeline 1.0.3 →FastQ File Analyses
- 16:45, 21 August 2014 diff hist 0 UGP Variant Pipeline 1.0.3 →Utah Genome Project
- 16:45, 21 August 2014 diff hist -25 UGP Variant Pipeline 1.0.3 →BAM Quality Control
- 16:44, 21 August 2014 diff hist +161 UGP Variant Pipeline 1.0.3 →BAM Quality Control
- 16:43, 21 August 2014 diff hist +4 UGP Variant Pipeline 0.0.3 →BAM Quality Control current
- 16:43, 21 August 2014 diff hist +26 UGP Variant Pipeline 0.0.3 →BAM Quality Control
- 16:42, 21 August 2014 diff hist -48 UGP Variant Pipeline 0.0.3 →BAM Quality Control
- 21:15, 15 August 2014 diff hist 0 UGP Variant Pipeline 1.0.3 →Data Source
- 21:15, 15 August 2014 diff hist 0 UGP Variant Pipeline 1.0.3 →Data Source
- 21:15, 15 August 2014 diff hist -131 UGP Variant Pipeline 1.0.3 →Data Source
- 20:56, 13 August 2014 diff hist -585 UGP Variant Pipeline 1.0.3 →SelectVariants & CombineVarients
- 20:54, 13 August 2014 diff hist 0 UGP Variant Pipeline 1.0.3 →VariantRecalibrator
- 20:54, 13 August 2014 diff hist 0 UGP Variant Pipeline 1.0.3 →GenotypeGVCFs
- 20:53, 13 August 2014 diff hist +6 UGP Variant Pipeline 1.0.3 →GenotypeGVCFs
- 20:53, 13 August 2014 diff hist -40 UGP Variant Pipeline 1.0.3 →CombineGVCFs
- 16:21, 20 June 2014 diff hist -2 UGP Variant Pipeline 1.0.3 →Data Source
- 16:20, 20 June 2014 diff hist +28 UGP Variant Pipeline 1.0.3 →Data Source
- 16:18, 20 June 2014 diff hist -11 UGP Variant Pipeline 1.0.3 →Variant Calling
- 16:17, 20 June 2014 diff hist +9 UGP Variant Pipeline 1.0.3 →Local Realignment of Indels
- 22:24, 18 June 2014 diff hist +50 UGP Variant Pipeline 1.0.3 →Data Source
- 20:36, 5 June 2014 diff hist -32 UGP Variant Pipeline 1.0.3 →HaplotypeCaller
- 17:10, 5 June 2014 diff hist +24 UGP Variant Pipeline 1.0.3 →VariantRecalibrator
- 17:08, 5 June 2014 diff hist +22 UGP Variant Pipeline 1.0.3 →GenotypeGVCFs
- 17:08, 5 June 2014 diff hist +11 UGP Variant Pipeline 1.0.3 →CombineGVCFs
- 17:07, 5 June 2014 diff hist -39 UGP Variant Pipeline 1.0.3 →GenotypeGVCFs
- 03:54, 3 June 2014 diff hist -1 UGP Variant Pipeline 1.0.3 →Software Versions
- 03:51, 3 June 2014 diff hist -358 UGP Variant Pipeline 1.0.3 →Variant Calling
- 03:51, 3 June 2014 diff hist +2 UGP Variant Pipeline 1.0.3 →Data Source
- 03:50, 3 June 2014 diff hist +1 UGP Variant Pipeline 1.0.3 →Data Source
- 03:50, 3 June 2014 diff hist -34 UGP Variant Pipeline 1.0.3 →Data Source
- 03:49, 3 June 2014 diff hist +265 UGP Variant Pipeline 1.0.3 →Data Source
- 18:24, 2 June 2014 diff hist +70 UGP Variant Pipeline 1.0.3 →Background Files
- 17:23, 2 June 2014 diff hist +39 UGP Variant Pipeline 1.0.3 →GenotypeGVCFs
- 17:22, 2 June 2014 diff hist +1 UGP Variant Pipeline 1.0.3 →Variant Calling
- 17:22, 2 June 2014 diff hist +11 UGP Variant Pipeline 1.0.3 →Background Files
- 17:21, 2 June 2014 diff hist +10 UGP Variant Pipeline 1.0.3 →Background Files
- 17:21, 2 June 2014 diff hist +266 UGP Variant Pipeline 1.0.3 →Variant Calling
- 17:17, 2 June 2014 diff hist -4 UGP Variant Pipeline 1.0.3 →Merge lane level BAMs to individual
- 04:17, 31 May 2014 diff hist +71 UGP Variant Pipeline
- 04:16, 31 May 2014 diff hist -1 UGP Variant Pipeline 1.0.3 →SelectVariants & CombineVarients
- 04:16, 31 May 2014 diff hist +2 UGP Variant Pipeline 1.0.3 →VariantRecalibrator
- 04:15, 31 May 2014 diff hist +1 UGP Variant Pipeline 1.0.3 →Local Realignment of Indels
- 04:13, 31 May 2014 diff hist +98 UGP Variant Pipeline 1.0.3 →SelectVariants & CombineVarients
- 04:11, 31 May 2014 diff hist +30 UGP Variant Pipeline 1.0.3 →SelectVariants
- 04:06, 31 May 2014 diff hist +2 UGP Variant Pipeline 1.0.3 →ApplyRecalibration
- 04:05, 31 May 2014 diff hist -2 UGP Variant Pipeline 1.0.3 →ApplyRecalibration
- 04:04, 31 May 2014 diff hist -530 UGP Variant Pipeline 1.0.3 →ApplyRecalibration
- 04:00, 31 May 2014 diff hist -1 UGP Variant Pipeline 1.0.3 →BAM Quality Control
- 03:59, 31 May 2014 diff hist +1 UGP Variant Pipeline 1.0.3 →CombineGVCFs
- 03:59, 31 May 2014 diff hist 0 UGP Variant Pipeline 1.0.3 →GenotypeGVCFs
- 03:59, 31 May 2014 diff hist -1 UGP Variant Pipeline 1.0.3 →HaplotypeCaller
- 22:25, 30 May 2014 diff hist +668 UGP Variant Pipeline 1.0.3 →Variant Calling
- 22:09, 30 May 2014 diff hist 0 UGP Variant Pipeline 1.0.3 →BAM Quality Control
- 22:08, 30 May 2014 diff hist +1 UGP Variant Pipeline 1.0.3 →Merge lane level BAMs to individual
- 22:08, 30 May 2014 diff hist -2 UGP Variant Pipeline 1.0.3 →BAM File Analyses and Processing
- 22:08, 30 May 2014 diff hist +15 UGP Variant Pipeline 1.0.3 →BAM File Analyses
- 22:07, 30 May 2014 diff hist -229 UGP Variant Pipeline 1.0.3 →ReduceReads
- 22:07, 30 May 2014 diff hist +4 UGP Variant Pipeline 1.0.3 →BAM Quality Control
- 22:07, 30 May 2014 diff hist -142 UGP Variant Pipeline 1.0.3 →BAM Quality Control
- 22:04, 30 May 2014 diff hist +314 UGP Variant Pipeline 1.0.3 →Base Quality Score Recalibration
- 22:00, 30 May 2014 diff hist -1 UGP Variant Pipeline 1.0.3 →Local Realignment of Indels
- 22:00, 30 May 2014 diff hist +316 UGP Variant Pipeline 1.0.3 →Local Realignment of Indels
- 21:55, 30 May 2014 diff hist +19 UGP Variant Pipeline 1.0.3 →Merge lane level BAMs to individual
- 21:55, 30 May 2014 diff hist -41 UGP Variant Pipeline 1.0.3 →Merge lane level BAMs to individual
- 21:54, 30 May 2014 diff hist -31 UGP Variant Pipeline 1.0.3 →Mark Duplicates
- 21:54, 30 May 2014 diff hist +59 UGP Variant Pipeline 1.0.3 →Local Realignment of Indels
- 21:51, 30 May 2014 diff hist +73 UGP Variant Pipeline 1.0.3 →Merge lane level BAMs to individual
- 21:48, 30 May 2014 diff hist -111 UGP Variant Pipeline 1.0.3 →Alignment
- 21:47, 30 May 2014 diff hist +1 UGP Variant Pipeline 1.0.3 →Indexing
- 21:47, 30 May 2014 diff hist +378 UGP Variant Pipeline 1.0.3
- 21:38, 30 May 2014 diff hist -10 UGP Variant Pipeline 1.0.3 →Alignment
- 21:38, 30 May 2014 diff hist -7 UGP Variant Pipeline 1.0.3 →BWA-mem
- 21:37, 30 May 2014 diff hist -3 UGP Variant Pipeline 1.0.3 →May. 2014
- 21:36, 30 May 2014 diff hist -9 UGP Variant Pipeline 1.0.3
- 21:35, 30 May 2014 diff hist +2 UGP Variant Pipeline 1.0.3 →Variant Calling Pipeline Version 1.0.3
- 21:35, 30 May 2014 diff hist -10 UGP Variant Pipeline 1.0.3
- 21:32, 30 May 2014 diff hist +19 UGP Variant Pipeline 1.0.3 →Alignment
- 21:30, 30 May 2014 diff hist +9,978 N UGP Variant Pipeline 1.0.3 Created page with "= Utah Genome Project = == Variant Calling Pipeline Version 1.0.3 == == May. 2014 == ===Software Versions=== **GenomeAnalysisTK-3.3-1 **Picard : Version: 1.112 **FastQC v..."
- 17:42, 28 May 2014 diff hist +1 UGP Variant Pipeline 0.0.3 →FastQ File Analyses
- 17:41, 28 May 2014 diff hist +13 UGP Variant Pipeline 0.0.3 →Sequencing
- 17:17, 14 February 2014 diff hist 0 UGP Variant Pipeline 0.0.3 →Software Versions
- 18:01, 16 January 2014 diff hist -16 Utah Genome Project →UGP Pipeline
- 17:51, 16 January 2014 diff hist -3 Utah Genome Project →UGP Pipeline
- 17:51, 16 January 2014 diff hist +104 Utah Genome Project
- 18:32, 6 January 2014 diff hist +1 Utah Genome Project →UGP Pipeline
- 18:32, 6 January 2014 diff hist -1 Utah Genome Project →Variant Analysis Pipeline Developement
- 18:31, 6 January 2014 diff hist 0 UGP Variant Pipeline
- 18:31, 6 January 2014 diff hist +71 UGP Variant Pipeline
- 18:29, 6 January 2014 diff hist -23 UGP Variant Pipeline 0.0.3 →Mark Duplicates
- 18:29, 6 January 2014 diff hist -34 UGP Variant Pipeline 0.0.3 →Merge lane level BAMs to individual
- 18:28, 6 January 2014 diff hist -21 UGP Variant Pipeline 0.0.3 →Alignment
- 18:27, 6 January 2014 diff hist +9 UGP Variant Pipeline 0.0.3 →Data Source
- 18:27, 6 January 2014 diff hist -6 UGP Variant Pipeline 0.0.3 →Data Source
- 18:26, 6 January 2014 diff hist -2 UGP Variant Pipeline 0.0.3 →Data Source
- 18:26, 6 January 2014 diff hist +2 UGP Variant Pipeline 0.0.3
- 18:25, 6 January 2014 diff hist +15 UGP Variant Pipeline 0.0.3 →Software Versions
- 18:24, 6 January 2014 diff hist +11 UGP Variant Pipeline 0.0.3 →Software Versions
- 18:24, 6 January 2014 diff hist +130 UGP Variant Pipeline 0.0.3
- 18:21, 6 January 2014 diff hist -1 UGP Variant Pipeline 0.0.3 →Sept. 2013
- 18:20, 6 January 2014 diff hist +122 UGP Variant Pipeline 0.0.3 →SelectVariants
- 18:19, 6 January 2014 diff hist +699 UGP Variant Pipeline 0.0.3
- 18:12, 6 January 2014 diff hist +10 UGP Variant Pipeline 0.0.3 →ApplyRecalibration
- 18:11, 6 January 2014 diff hist -50 UGP Variant Pipeline 0.0.3 →VariantRecalibrator
- 18:11, 6 January 2014 diff hist -50 UGP Variant Pipeline 0.0.3 →UnifiedGenotyper
- 18:10, 6 January 2014 diff hist +310 UGP Variant Pipeline 0.0.3 →ApplyRecalibration
- 18:06, 6 January 2014 diff hist +655 UGP Variant Pipeline 0.0.3 →VariantRecalibrator
- 17:59, 6 January 2014 diff hist -1 UGP Variant Pipeline 0.0.3 →UnifiedGenotyper
- 17:59, 6 January 2014 diff hist +448 UGP Variant Pipeline 0.0.3 →UnifiedGenotyper
- 17:58, 6 January 2014 diff hist +6 UGP Variant Pipeline 0.0.3 →UnifiedGenotyper
- 17:58, 6 January 2014 diff hist -45 UGP Variant Pipeline 0.0.3 →UnifiedGenotyper
- 17:50, 6 January 2014 diff hist +3 UGP Variant Pipeline 0.0.3 →ReduceReads
- 17:49, 6 January 2014 diff hist -26 UGP Variant Pipeline 0.0.3 →Reduce Reads
- 17:46, 6 January 2014 diff hist -2,664 UGP Variant Pipeline 0.0.3 →BAM Quality Control
- 17:45, 6 January 2014 diff hist +33 UGP Variant Pipeline 0.0.3 →BAM Quality Control
- 17:43, 6 January 2014 diff hist -40 UGP Variant Pipeline 0.0.3 →Base Quality Score Recalibration
- 17:43, 6 January 2014 diff hist +56 UGP Variant Pipeline 0.0.3 →Base Quality Score Recalibration
- 17:42, 6 January 2014 diff hist +1 UGP Variant Pipeline 0.0.3 →Base Quality Score Recalibration
- 17:41, 6 January 2014 diff hist +1 UGP Variant Pipeline 0.0.3 →Local Realignment of Indels
- 17:41, 6 January 2014 diff hist -524 UGP Variant Pipeline 0.0.3 →Local Realignment of Indels
- 17:36, 6 January 2014 diff hist +9 UGP Variant Pipeline 0.0.3
- 17:33, 6 January 2014 diff hist 0 UGP Variant Pipeline 0.0.3
- 17:33, 6 January 2014 diff hist -2,065 UGP Variant Pipeline 0.0.3
- 17:13, 6 January 2014 diff hist +41 UGP Variant Pipeline 0.0.3
- 17:03, 6 January 2014 diff hist +185 UGP Variant Pipeline 0.0.3
- 16:59, 6 January 2014 diff hist +13,290 N UGP Variant Pipeline 0.0.3 Created page with "= Utah Genome Project = == Variant Calling Pipeline Version 0.0.3 == == Sept. 2013 == === Data Source === Data sets used for the variant calling pipeline come from the Broa..."
- 03:46, 9 December 2013 diff hist +4 Utah Genome Project →UGP Pipeline
- 03:46, 9 December 2013 diff hist +5 Utah Genome Project →UGP Pipeline Config
- 16:54, 3 October 2013 diff hist -204 UGP Pipeline Config Template 0.0.4 current
- 21:27, 30 September 2013 diff hist +22 UGP Pipeline Config Template 0.0.4
- 21:27, 30 September 2013 diff hist +5 UGP Pipeline Config Template 0.0.4
- 20:28, 30 September 2013 diff hist -92 UGP Pipeline Config Template 0.0.4
- 20:19, 30 September 2013 diff hist +42 Utah Genome Project →UGP Pipeline Config
- 20:18, 30 September 2013 diff hist +17,510 N UGP Pipeline Config Template 0.0.4 Created page with "<pre> ############################################################# ############################################################# ################## cApTUrE config file #####..."
- 15:46, 20 September 2013 diff hist +65 UGP Pipeline Config Template 0.0.3 current
- 15:43, 20 September 2013 diff hist -1 UGP Pipeline Config Template 0.0.3
- 15:42, 20 September 2013 diff hist +42 Utah Genome Project →UGP Pipeline Config
- 15:42, 20 September 2013 diff hist +17,784 N UGP Pipeline Config Template 0.0.3 Created page with "<pre> ############################################################# ############################################################# ################## cApTUrE config file #####..."
- 19:04, 6 September 2013 diff hist +11 UGP Variant Pipeline 0.0.2 →Variant File QC current
- 19:02, 6 September 2013 diff hist +10 UGP Variant Pipeline 0.0.2 →VariantRecalibrator
- 19:01, 6 September 2013 diff hist -2 UGP Variant Pipeline 0.0.2 →VariantRecalibrator
- 18:32, 6 September 2013 diff hist +40 UGP Variant Pipeline 0.0.2
- 18:32, 6 September 2013 diff hist +41 UGP Variant Pipeline 0.0.2 →Mark Duplicates
- 17:43, 6 September 2013 diff hist +40 UGP Variant Pipeline 0.0.2 →FastQ File Analyses
- 17:40, 6 September 2013 diff hist -79 UGP Variant Pipeline 0.0.2 →Alignment
- 17:39, 6 September 2013 diff hist +2 UGP Variant Pipeline 0.0.2 →Alignment
- 17:39, 6 September 2013 diff hist +114 UGP Variant Pipeline 0.0.2 →Alignment
- 17:36, 6 September 2013 diff hist +74 UGP Variant Pipeline 0.0.2 →Variant File QC
- 17:34, 6 September 2013 diff hist +238 UGP Variant Pipeline 0.0.2 →BAM Quality Control
- 17:34, 6 September 2013 diff hist +85 UGP Variant Pipeline 0.0.2
- 17:32, 6 September 2013 diff hist -354 UGP Variant Pipeline 0.0.2 →BAM Quality Control
- 17:31, 6 September 2013 diff hist +21 UGP Variant Pipeline 0.0.2 →Data Source
- 17:30, 6 September 2013 diff hist +8 UGP Variant Pipeline 0.0.2
- 17:29, 6 September 2013 diff hist -3,773 UGP Variant Pipeline 0.0.2
- 16:54, 6 September 2013 diff hist -1,956 UGP Variant Pipeline 0.0.2
- 16:39, 6 September 2013 diff hist -4 UGP Variant Pipeline 0.0.2
- 16:38, 6 September 2013 diff hist +59 UGP Variant Pipeline 0.0.2 →Sort BAM
- 16:37, 6 September 2013 diff hist -2,980 UGP Variant Pipeline 0.0.2
- 16:21, 6 September 2013 diff hist +52 UGP Variant Pipeline 0.0.2
- 16:04, 6 September 2013 diff hist +300 UGP Variant Pipeline 0.0.2 →Alignment
- 15:43, 6 September 2013 diff hist -124 UGP Variant Pipeline 0.0.2 →BAM File Analyses
- 15:43, 6 September 2013 diff hist +6 UGP Variant Pipeline 0.0.2 →BAM File Analyses
- 15:42, 6 September 2013 diff hist -3 UGP Variant Pipeline 0.0.2 →Alignment
- 15:42, 6 September 2013 diff hist +79 UGP Variant Pipeline 0.0.2 →Alignment
- 15:38, 6 September 2013 diff hist +40 UGP Variant Pipeline 0.0.2 →FastQ File Analyses
- 15:38, 6 September 2013 diff hist -56 UGP Variant Pipeline 0.0.2
- 15:35, 6 September 2013 diff hist +4 UGP Variant Pipeline 0.0.2 →Data Source
- 04:21, 6 September 2013 diff hist -6,245 UGP Variant Pipeline 0.0.2
- 03:58, 6 September 2013 diff hist +176 UGP Variant Pipeline 0.0.2 →Data Source
- 03:53, 6 September 2013 diff hist +27,047 N UGP Variant Pipeline 0.0.2 Created page with "= Utah Genome Project = == Variant Calling Pipeline == === Data Source === Data sets used for the variant calling pipeline come from the Broad GSA (GATK) group as the 'GATK..."
- 19:40, 27 August 2013 diff hist -1,439 UGP Pipeline Config Template 0.0.2 current
- 18:19, 27 August 2013 diff hist +208 N UGP Variant Pipeline Created page with "* UGP Variant Pipeline Version 0.0.2 * UGP Variant Pipeline Version 0.0.1 * UGP_Variant_Pipeline_Sandbox ..."
- 18:19, 27 August 2013 diff hist -159 Utah Genome Project
- 18:17, 27 August 2013 diff hist +110 UGP Pipeline Config Template 0.0.2
- 17:44, 27 August 2013 diff hist +732 UGP Pipeline Config Template 0.0.2
- 17:02, 27 August 2013 diff hist +14,713 N UGP Pipeline Config Template 0.0.2 Created page with "<pre> ############################################################# # REQUIRED OPTIONS ############################################################# # http://support.illumin..."
- 17:02, 27 August 2013 diff hist +1 Utah Genome Project →UGP Pipeline Config
- 17:01, 27 August 2013 diff hist +69 Utah Genome Project
- 16:54, 27 August 2013 diff hist +71 Utah Genome Project
- 03:51, 3 June 2013 diff hist -48 UGP Variant Pipeline 0.0.1 current
- 03:48, 2 June 2013 diff hist -430 Utah Genome Project
- 03:44, 2 June 2013 diff hist 0 m Utah Genome Project Admin moved page Main Page to Utah Genome Project
- 03:44, 2 June 2013 diff hist +33 N Main Page Admin moved page Main Page to Utah Genome Project current
- 19:59, 29 May 2013 diff hist +1,260 UGP Variant Pipeline Sandbox current
- 19:55, 29 May 2013 diff hist +69 UGP Variant Pipeline Sandbox →Alignment of Illumina HiSeq PE 101 bp sequences with bwa aln
- 19:52, 29 May 2013 diff hist +747 UGP Variant Pipeline Sandbox →Alignment of Illumina HiSeq PE 101 bp sequences with bwa
- 19:50, 29 May 2013 diff hist +743 UGP Variant Pipeline 0.0.1 →Alignment of Illumina HiSeq PE 101 bp sequences with bwa
- 19:46, 29 May 2013 diff hist +105 UGP Variant Pipeline 0.0.1
- 19:42, 29 May 2013 diff hist +6 Utah Genome Project
- 19:42, 29 May 2013 diff hist +26,020 N UGP Variant Pipeline Sandbox Created page with "== Sources of Analysis Info == * 1KG Analysis README * Broad GATK docs * [http://www.bbmriwiki.nl/wiki/PipelineCommands Nice collection (somewhat dated) of Command Lines from..."
- 19:41, 29 May 2013 diff hist +67 Utah Genome Project
- 19:40, 29 May 2013 diff hist +26,020 N UGP Variant Pipeline 0.0.1 Created page with "== Sources of Analysis Info == * 1KG Analysis README * Broad GATK docs * [http://www.bbmriwiki.nl/wiki/PipelineCommands Nice collection (somewhat dated) of Command Lines from..."
- 19:40, 29 May 2013 diff hist +16 Utah Genome Project