Difference between revisions of "Main Page"
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Welcome to the MAKER Wiki. This is a place to find documentation, and details about the MAKER Genome Annotation Pipeline: | Welcome to the MAKER Wiki. This is a place to find documentation, and details about the MAKER Genome Annotation Pipeline: | ||
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==Getting started with MAKER== | ==Getting started with MAKER== | ||
* [http://www.yandell-lab.org/software/maker.html Download and License MAKER] | * [http://www.yandell-lab.org/software/maker.html Download and License MAKER] | ||
| − | * [[MAKER Tutorial]] | + | * [[MAKER Tutorial for WGS Assembly and Annotation Winter School 2018]] |
| + | * [[MAKER Tutorial for GMOD Online Training 2014]] (includes instructional video and slides) | ||
* [[MAKER tutorial for GMOD Malaysia]] | * [[MAKER tutorial for GMOD Malaysia]] | ||
| + | * [http://efish.zoology.msu.edu/2015/02/10/annotate.html MAKER in the AWS Cloud Tutorial (Gallant Lab - MSU)] | ||
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| + | ==MAKER on CyVerse (previously iPlant)== | ||
| + | * [https://pods.iplantcollaborative.org/wiki/display/TUT/MAKER+2.31.9+with+CCTOOLS+Jetstream+Tutorial MAKER at CyVerse] | ||
==Creating a species specific repeat library== | ==Creating a species specific repeat library== | ||
| + | * [[Repeat Library Construction-Basic]] | ||
| + | * [[Repeat Library Construction-Advanced]] | ||
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| + | ==Getting Help with MAKER== | ||
| + | * [[FAQ]] | ||
| + | *[https://groups.google.com/forum/?fromgroups#!forum/maker-devel MAKER developers list archive] | ||
| + | * [[MAKER developers list]] | ||
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==Other MAKER use cases== | ==Other MAKER use cases== | ||
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* [[Your Genome Project Start to Finish--UNDER CONSTRUCTION]] | * [[Your Genome Project Start to Finish--UNDER CONSTRUCTION]] | ||
* [[Comparing annotations from different annotation pipelines--UNDER CONSTRUCTION]] | * [[Comparing annotations from different annotation pipelines--UNDER CONSTRUCTION]] | ||
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==MAKER odds and ends== | ==MAKER odds and ends== | ||
* [[The MAKER control files explained]] | * [[The MAKER control files explained]] | ||
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== Media Wiki Stuff == | == Media Wiki Stuff == | ||
| + | Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software. | ||
* [//www.mediawiki.org/wiki/Manual:Configuration_settings Configuration settings list] | * [//www.mediawiki.org/wiki/Manual:Configuration_settings Configuration settings list] | ||
* [//www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ] | * [//www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ] | ||
* [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list] | * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list] | ||
* [//www.mediawiki.org/wiki/Localisation#Translation_resources Localise MediaWiki for your language] | * [//www.mediawiki.org/wiki/Localisation#Translation_resources Localise MediaWiki for your language] | ||
Revision as of 13:26, 6 February 2018
Welcome to the MAKER Wiki. This is a place to find documentation, and details about the MAKER Genome Annotation Pipeline:
Contents
Getting started with MAKER
- Download and License MAKER
- MAKER Tutorial for WGS Assembly and Annotation Winter School 2018
- MAKER Tutorial for GMOD Online Training 2014 (includes instructional video and slides)
- MAKER tutorial for GMOD Malaysia
- MAKER in the AWS Cloud Tutorial (Gallant Lab - MSU)
MAKER on CyVerse (previously iPlant)
Creating a species specific repeat library
Getting Help with MAKER
Other MAKER use cases
- Updating annotations in light of new data
- Your Genome Project Start to Finish--UNDER CONSTRUCTION
- Comparing annotations from different annotation pipelines--UNDER CONSTRUCTION
MAKER odds and ends
Media Wiki Stuff
Consult the User's Guide for information on using the wiki software.
