Main Page

Welcome to the MAKER Wiki. This is a place to find documentation, and details about the MAKER Genome Annotation Pipeline:

Getting started with MAKER

• Download and License MAKER
• MAKER Tutorial for WGS Assembly and Annotation Winter School 2018
• MAKER Tutorial for GMOD Online Training 2014 (includes instructional video and slides)
• MAKER tutorial for GMOD Malaysia
• MAKER in the AWS Cloud Tutorial (Gallant Lab - MSU)

MAKER on CyVerse (previously iPlant)

• MAKER at CyVerse

Creating a species specific repeat library

• Repeat Library Construction-Basic
• Repeat Library Construction-Advanced

Getting Help with MAKER

• FAQ
• MAKER developers list archive
• MAKER developers list

Other MAKER use cases

• Updating annotations in light of new data
• Your Genome Project Start to Finish--UNDER CONSTRUCTION
• Comparing annotations from different annotation pipelines--UNDER CONSTRUCTION

MAKER odds and ends

• The MAKER control files explained

Media Wiki Stuff

Consult the User's Guide for information on using the wiki software.

• Configuration settings list
• MediaWiki FAQ
• MediaWiki release mailing list
• Localise MediaWiki for your language