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| − | Welcome to the MAKER Wiki. This is a place to find documentation, and details about the MAKER Genome Annotation Pipeline:
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| − | ==Getting started with MAKER==
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| − | * [http://www.yandell-lab.org/software/maker.html Download and License MAKER]
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| − | * [[MAKER Tutorial for WGS Assembly and Annotation Winter School 2018]]
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| − | * [[MAKER Tutorial for GMOD Online Training 2014]] (includes instructional video and slides)
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| − | * [[MAKER tutorial for GMOD Malaysia]]
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| − | * [http://efish.zoology.msu.edu/2015/02/10/annotate.html MAKER in the AWS Cloud Tutorial (Gallant Lab - MSU)]
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| − | ==MAKER on CyVerse (previously iPlant)==
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| − | * [https://pods.iplantcollaborative.org/wiki/display/TUT/MAKER+2.31.9+with+CCTOOLS+Jetstream+Tutorial MAKER at CyVerse]
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| − | ==Creating a species specific repeat library==
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| − | * [[Repeat Library Construction-Basic]]
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| − | * [[Repeat Library Construction-Advanced]]
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| − | ==Getting Help with MAKER==
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| − | * [[FAQ]]
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| − | *[https://groups.google.com/forum/?fromgroups#!forum/maker-devel MAKER developers list archive]
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| − | * [[MAKER developers list]]
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| − | ==Other MAKER use cases==
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| − | * [[Updating annotations in light of new data]]
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| − | * [[Your Genome Project Start to Finish--UNDER CONSTRUCTION]]
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| − | * [[Comparing annotations from different annotation pipelines--UNDER CONSTRUCTION]]
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| − | ==MAKER odds and ends==
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| − | * [[The MAKER control files explained]]
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| − | == Media Wiki Stuff ==
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| − | Consult the [//meta.wikimedia.org/wiki/Help:Contents User's Guide] for information on using the wiki software.
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| − | * [//www.mediawiki.org/wiki/Manual:Configuration_settings Configuration settings list]
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| − | * [//www.mediawiki.org/wiki/Manual:FAQ MediaWiki FAQ]
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| − | * [https://lists.wikimedia.org/mailman/listinfo/mediawiki-announce MediaWiki release mailing list]
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| − | * [//www.mediawiki.org/wiki/Localisation#Translation_resources Localise MediaWiki for your language]
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